Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs7208135 chr17:29016972 A/G 1.49E-5 405 14.2 16.53 9.8 KM Plot
STAD rs72253615 chr1:227403459 TTAAC/T 0 405 14.27 14.45 1.48 KM Plot
STAD rs72926046 chr11:64143387 A/G 8.17E-7 397 14.23 15.92 6.83 KM Plot
STAD rs72926050 chr11:64143574 C/G 8.17E-7 397 14.23 15.92 6.83 KM Plot
STAD rs72926320 chr3:97043005 G/A 2.2E-8 399 14.22 17.1 3.25 KM Plot
STAD rs72926335 chr3:97060106 A/G 1.76E-8 403 14.23 19.23 3.25 KM Plot
STAD rs72926340 chr3:97066782 T/C 1.85E-8 402 14.23 19.23 3.25 KM Plot
STAD rs73066802 chr2:200785572 G/A 3.87E-6 401 14.97 14.22 7.32 KM Plot
STAD rs73091774 chr1:227253807 T/C 0 406 14.27 14.23 1.48 KM Plot
STAD rs73093463 chr1:227266442 T/C 0 406 14.27 14.23 1.48 KM Plot
STAD rs73093495 chr1:227272527 G/C 0 406 14.27 14.23 1.48 KM Plot
STAD rs73094351 chr1:227399479 G/A 0 405 14.27 14.45 1.48 KM Plot
STAD rs73096350 chr1:227436302 C/T 0 405 14.25 14.67 1.48 KM Plot
STAD rs73096353 chr1:227436666 C/A 0 405 14.25 14.67 1.48 KM Plot
STAD rs73096358 chr1:227439698 T/C 0 404 14.25 14.45 1.48 KM Plot